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News

Oct 26 2018

PhenoTips 1.4 Release Candidate 4 Released

The PhenoTips development team is happy to announce the availability of the PhenoTips 1.4 RC4 release.
In this is release, the following items have been done:

New Feature

  • PT-3829 - Enable auditing push events

Improvements

  • PT-3837 - Clarify the meaning of the "CNP" variant classification for CNVs
    Improvement
  • PT-2520 - Make the SVG output of the pedigree editor scrollable
  • PT-3851 - The XAR export on family pages should include the records for all family members
  • PT-3822 - Text mining should be available as an extension rather than part of PhenoTips install

Defects

  • PT-3824 - Creating a new family member using the "Add family member" button in pedigree editor does not add new patient to the family
  • PT-3826 - Switching languages while editing patient record causes strange behaviour
  • PT-3840 - Server logs are flooded with "deprecated parseContent" warnings
  • PT-3844 - Reindexing ORDO fails
  • PT-3845 - Changing a vocabulary source doesn't work
  • PT-3846 - Broken "Is a type of" displayed in the term info box for ORDO terms
  • PT-3847 - After reindexing ORDO, the vocabulary version is no longer known
  • PT-3848 - Reindexing ORDO with the default source URL always ends up with a very old version of ORDO

See the full list of changes in JIRA

Aug 16 2018

PhenoTips 1.3.8 (stable) Released

The PhenoTips development team is happy to announce the availability of the PhenoTips 1.3.8 release.
In this is release, the following defects have been addressed:

  • PT-2091 - User profile's setting label and icon are overlapped
  • PT-3600 - Autocomplete/suggest inputs in the pedigree node popover retain input between different nodes
  • PT-3690 - Subgroup members should be able to see main group members and shared cases
  • PT-3738 - $services.groups.getGroupsForUser returns just a few of the user's workgroups
  • PT-3746 - Passing a group to EntityAccessManager.isAdministrator triggers an XWiki permissions cache bug
  • PT-3771 - Unable to transfer ownership to a supergroup
  • PT-3814 - Attachment filenames are parsed for XWiki markup

See the full list of changes in JIRA

PhenoTips 1.4 Release Candidate 3 Released

The PhenoTips development team is happy to announce the availability of the PhenoTips 1.4 RC3 release.
In this is release, the following items have been done:

Improvement

  • PT-3755 - Clarify the existence of 2 JSON Import/Export options available in the pedigree editor

Tasks

  • PT-3810 - Remove ctakes from the PhenoTips deployment
  • PT-3811 - Remove ctakes from the text mining options, and disable text mining by default

Bugs

  • PT-3759 - The pedigree editor still allows duplicate external IDs
  • PT-3760 - Duplicate patient external IDs are allowed in the same pedigree
  • PT-3804 - Postgres support not working in v1.4-rc-1
  • PT-3807 - The "Group Shared Cases" table doesn't include open cases for non-members
  • PT-3809 - Export to PDF fails for non-admin users
  • PT-3812 - Saving pedigrees fails when family members have medical reports attached
  • PT-3814 - Attachment filenames are parsed for XWiki markup

See the full list of changes in JIRA