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Mar 22 2017

PhenoTips 1.3 Release Candidate 3 Released

The PhenoTips development team is happy to announce the availability of the PhenoTips 1.3 Release Candidate 3. The following fixes and  improvements are in this release:

Defects

PT-1688 - Check box and delete icon are both visible in OMIM diagnosis field.
PT-3151 - Upgrading the RPM installation does not add the ORPHANET index
PT-3154 - Incorrect text in OMIM disorder field description - "i" button
PT-3158 - "phenotips.IndexOntology.version" displayed in place of the actual version in vocabulary term descriptions

Improvements

PT-3152 - Add "Clinical Diagnosis (ORDO)" and "Molecular Diagnosis (OMIM)" label to clinical diagnosis and molecular diagnosis sections
PT-3153 - Change "Orphanet" and "ORPHA" to "ORDO"
PT-3155 - Add field description for Clinical Diagnosis - "i" button

Mar 21 2017

PhenoTips 1.3 Release Candidate 2 Released

The PhenoTips development team is happy to announce the availability of the PhenoTips 1.3 Release Candidate 2. The following fixes and improvements are in this release:

Defects

  • PT-3133 - Download of Safari-created pedigree PNG image fails
  • PT-3137 - Existing entries in the push configuration tables in the administration can no longer be modified
  • PT-3139 - Excel export fails when there are patients without a clinical diagnosis
  • PT-3140 - Unparsed code displayed when displaying PhenomeCentral's consents in the Push dialog
  • PT-3141 - Suggested gene panels in UI differ from curl REST call
  • PT-3142 - Date of death and cause of death display is not always updated in pedigree editor
  • PT-3143 - Non-admin users shouldn't be allowed to Export patient and family records as XARs
  • PT-3145 - Pedigree fails to apply automatic layout in some cases
  • PT-3147 - Pedigree node removal and redraw algorithm is sometimes terminated by a (silently hidden) exception

Improvements

  • PT-2965 - Minor correction in language used in pedigree editor
  • PT-3144 - Change labeling of "Instant OMIM Search" to "Matching Disorders in OMIM"
  • PT-3146 - Change labeling of "Instant Gene Search" to "Matching Genes"
  • PT-2703 - Make it more obvious that disabled form sections / fields can be re-activated

Mar 20 2017

PhenoTips 1.3 Release Candidate 1 Released

The PhenoTips development team is happy to announce the availability of the PhenoTips 1.3  Release Candidate 1. The highlights of the release are:

New features

  • Working Clinical Diagnosis linked to ORPHANET is added in addition to the existing Molecularly confirmed diagnosis.

Improvements

  • Added support for searching for families in the header search box
  • When PhenoTips is used in a language other than English, the vocabulary terms are now also displayed in that language, if a translation is available
    • Added support for French and Italian HPO
  • Numerous ui improvements in Push dialog, Export dialog and Pedigree editor
  • On the patient record form paternal and maternal ethnicities are swapped, so paternal is now on the left side and maternal ethnicity on the right
  • In the pedigree, the order of the proband's parents is enforced to father-left mother-right
  • Added fourth gene status option "carrier" in Genotypes section of the Patient record form
  • Added support for carrier genes in the Pedigree editor
  • Upper bound for number of children is now eliminated in the Pedigree editor
  • Improved the look of Administration: Vocabulary Index page
  • OMIM can again be re-indexed from the administration, although you have to request a valid download URL for your institution

See the full list of changes on Jira.