PhenoTips » Releases » Release for version phenotips-1.4.7
From version 1.1
edited by Sasha Andjic
on 2019/05/15 23:08
To version 2.1
edited by Sasha Andjic
on 2019/05/15 23:45
Change comment: There is no comment for this version

Content changes

... ... @@ -13,9 +13,9 @@
13 13 * (x) Increase the amount of memory available to Maven: ##export MAVEN_OPTS="-Xmx2g -XX:MaxPermSize=256m"##
14 14 * (x) [[Perform the release>>Release.ReleasePlanHelp||anchor="HBuildtherelease"]]
15 15 * (x) Unzip the standalone distributions and perform a quick smoke test:
16 -** (x) install and start phenotips on Linux, OS and Windows ( check the console window for errors)?
17 -*** (x) can you create a new patient? ( check console window)
18 -** (x) Does the homepage display correctly?
16 +** (x) install and start phenotips on Linux, OS and *Windows* ( check the console window for errors)?
17 +*** (/) can you create a new patient? ( check console window)
18 +** (/) Does the homepage display correctly?
19 19 ** (x) Do suggest widgets for vocabularies in Advanced filters work (Patients, Families, Studies, Groups)
20 20 ** (x) Do filters work as expected?
21 21 *** (x) in the Filtering panel of Browse all patients/families?
... ... @@ -24,7 +24,7 @@
24 24 ** (x) Can you add owner, collaborators and visibility to Browse all patients grid?
25 25 ** (x) Does creating a new patient work?
26 26 ** (x) Do hints work?
27 -** (x) Does creating a pedigree from a patient page work?
27 +** (/) Does creating a pedigree from a patient page work?
28 28 *** (x) Can you assign a patient to an existing family?
29 29 *** (x) Can you create a new family for patient?
30 30 *** (x) Does linking and un-linking patient to/from a pedigree node works?
... ... @@ -64,7 +64,7 @@
64 64 *** (x) Does export as PED work, does disorder/cancer selection in the export menu work (when exporting as PED)?
65 65 *** (x) Can you export pedigree as PDF, PNG and SVG?
66 66 *** (x) Does printing a pedigree work? (try different options e.g. anonymized, with/without legend, multiple pages, zoomed & panned, etc)
67 -*** (x) Does saving a pedigree work?
67 +*** (/) Does saving a pedigree work?
68 68 *** (x) Are saving failures for common reasons clearly communicated to the user?
69 69 **** (x) In a separate tab, log out of PhenoTips. Then try saving the pedigree in the pedigree editor. Does the editor correctly and visibly inform you that saving failed?
70 70 **** (x) From the terminal, shut down PhenoTips. Then try saving the pedigree. Does the editor correctly and visibly inform you that saving failed?
... ... @@ -74,22 +74,22 @@
74 74 ** (x) Does the Pedigree and Family section show pedigree thumbnail with its action buttons?
75 75 ** (x) Do all pedigree action buttons work as expected?
76 76 ** (x) Does ethnicity suggestion box work? Does saving ethnicities work?
77 -** (x) Does ##Other## prenatal growth parameters and development search/suggestions work?
78 -** (x) Can you record allergies?
79 -** (x) Do measurements work? Percentile computations? Charts?
80 -** (x) Can you upload a previous medical report?
81 -** (x) Can you search for a list of genes?
82 -** (x) Can you upload a VCF file?
83 -** (x) Are phenotype categories collapsed by default?
84 -** (x) Are the predefined phenotypes correctly displayed?
85 -** (x) Does the //Quick phenotype search// work?
86 -** (x) Can you enter free text in the //Quick phenotype search// and in predefined phenotype groups?
87 -*** (x) Does free text appears under proper category?
88 -** (x) Are Global mode of inheritance and Global age of onset collapsed by default?
89 -** (x) Are Global mode of inheritance and Global age of onset taken into account for diagnosis and "other phenotypes" suggestions?
90 -** (x) Does adding phenotype details work?
77 +** (/) Does ##Other## prenatal growth parameters and development search/suggestions work?
78 +** (/) Can you record allergies?
79 +** (/) Do measurements work? Percentile computations? Charts?
80 +** (/) Can you upload a previous medical report?
81 +** (/) Can you search for a list of genes?
82 +** (/) Can you upload a VCF file?
83 +** (/) Are phenotype categories collapsed by default?
84 +** (/) Are the predefined phenotypes correctly displayed?
85 +** (/) Does the //Quick phenotype search// work?
86 +** (/) Can you enter free text in the //Quick phenotype search// and in predefined phenotype groups?
87 +*** (/) Does free text appears under proper category?
88 +** (/) Are Global mode of inheritance and Global age of onset collapsed by default?
89 +** (/) Are Global mode of inheritance and Global age of onset taken into account for diagnosis and "other phenotypes" suggestions?
90 +** (/) Does adding phenotype details work?
91 91 ** (x) Do the diagnosis suggestions show up correctly (test with some phenotypes selected)?
92 -** (x) Do the gene suggestion show up correctly in the Gene Panels section (test selecting/deselecting phenotypes and negative genes option)?
92 +** (/) Do the gene suggestion show up correctly in the Gene Panels section (test selecting/deselecting phenotypes and negative genes option)?
93 93 ** (x) Are all 4 gene statuses (##Candiate, Negative Confirmed causal, Carrier##) listed in the gene status dropdown?
94 94 ** (x) Does entering genes and variants work as expected?
95 95 *** (x) Do gene suggestions appear as expected (try entering partial gene name, alias or Ensembl ID)?

Availability

PhenoTips® is freely available under the terms of the the GNU Affero General Public License, version 3.0.

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